925-456-1020 info@acornnmr.com

Command List

Command Index

NOTE: Quick command reference can be displayed by typing a ? followed by a letter, to display all commands starting with that letter (eg., “? a” would display commands such as AP – autophase). For many commands, typing the command followed by a ? will display help on the use of that command.

Page up/Page down, Up/Down arrow keys, < and > keys — vertical scaling of the spectrum

Ctrl-E – show expanded display; see zoom subroutine for setting expansion limits

Ctrl-F – show full display

Ctrl-I – toggle on/off display of integrals

Ctrl-P – toggle on/off display of peak labels

1D – 1D display mode

2D2D display mode (equivalent to IP command)

aiauto integration

ap – auto-phase

asPairs – Add and subtract pairs of slices, for echo-antiecho data; see description of 2D processing

axis – used to set units for the axis. The command can take 2 arguments. If the first argument is a number from 1 to 4, it is taken to indicate dimension. The second argument can be none, points, hertz or ppm. If the number is omitted, and is followed by one of these 4 keywords, dimension 1 is assumed.

bc – remove DC offset between real and imaginary FIDs, to eliminate center glitch

blc – BaseLine Correct; this is correction using a “segmented” baseline correction

block – used to select a desired block (3D sub-spectrum) of a 4D data set. “block ?” will return the current block number.

buBuffers subroutine, for displaying multiple spectra

c+ — display only positive contour levels

c- — display only negative contour levels

c0 — display both positive and negative contour levels (default)

clip — specify a cutoff at the top of plots (added for printers that can’t handle peaks being off the page)

co — comment, or spectrum description; displays the parameters dialog box

convolution — work in progress

copy – copy the spectrum, as currently displayed, to the clipboard as a bitmap

cp – display contour plot

cr – set contour plot colors

cs – Clear Scale. By default, each spectrum is displayed with a vertical scale chosen to fit the window. The FS (Fixed Scale) command will prevent this automatic re-scaling, allowing different spectra to be compared. CS is used to remove the fixed scaling.

cv – covariance; this is in development

cwd – print the paths to important directories

d1 – edit list of delay values, use in analysis of relaxation and kinetics data

dc – enter a value for vertical offset of the spectrum (eg, dc 10 causes the spectrum to be drawn with its baseline 10% of the way up the screen)

decimate or dec – reduces data by discarding points at both ends of the spectrum, or by averaging pairs of points in a FID. See details.

df — FT and adjust for digital filtering. See Rotate Data.

dm – draw mode; allows the spectrum to be drawn as points, lines connecting data points (default), and to display real points (default), imaginary points, both real and imaginary points, or a zoom region. Allowed arguments are: pts, points, all, real, imag, zoom and help.

dp – enter the Define Peaks subroutine (peak picking works in 1D display mode only)

dr – Data Reduction, for calculation of relaxation and kinetics data

draw – copy the spectrum, as currently displayed, to the clipboard as a metafile (Windows) or PICT (Mac)

dtdata table; allows a table to be displayed into which spectral information can be entered

em – apply exponential linebroadening. The command can take one argument, which is the value of the linebroadening parameter. If this argument is omitted, the current value of LB will be used.

ep – Displays a dialog box for editing display parameters for 2D plots

ernst – Determine the Ernst angle

exportexport data as ascii or jcamp; also allows conversion of a 2D spectrum into a series of 1D files

extract (or xt) — allows extraction of a region of a 1D spectrum, or a range of slices from a 2D spectrum. See details.

fa – Set font for the axis

fb – enter the Fix Baseline subroutine for interactive baseline correction

ft – execute complex Fourier Transform. The type of transform applied depends on the data type, and will be a complex, real or “Bruker” transform for data that are complex, real or Bruker sequential, respectively. The command can take one of the following arguments to force the transform type: real, complex, tppi (for Bruker sequential data), inverse or hilbert.

fs – Fixed Scale. By default, each spectrum is displayed with a vertical scale chosen to fit the window. FS will prevent this automatic re-scaling, allowing different spectra to be compared. This can be undone with CS (Clear Scale).

ga – open a NUTS-format file, referred to as FileA; allowed argument: file name, with or without complete path.

gb – open a NUTS-format file; provides a way to keep track of 2 file names, FileA and FileB

gammah2 – calculates decoupling power from coupling constant, residual observed splitting and frequency offset

gm – Gaussian multiplication

gr – Get Relaxation data; measures the integrals of 1 region over a series of slices, which are then used in relaxation and kinetics analysis

head – Set zoom limits to display the beginning of the data. The percentage of data displayed is set with “head % n” or “head n” where n is the desired percentage.

help – display the Help file

hihistogram; also known as “binning”, for analysis of complex spectra such as biofluids

hpfhigh-pass filter

ht – Hilbert Transform, used when there is no imaginary half of the FID

id – enter the Integration subroutine

iiinvert imaginary half of the data

im – import a data file in its native spectrometer format; allowed argument: file name, with or without complete path

invert – inverts every other slice, used for processing states-tppi data

ip – display 2D Intensity Plot

is or insert – routine for creating an inset plot

it – Inverse Transform, to transform from frequency to time domain

lb – enter a linebroadening value to be applied with EM

lf – enter Line Fitting subroutine

lnlinear prediction

loLook; routine for displaying the contents of a data file

lp – List Parameters; this command creates a text annotation containing acquisition parameters. See Notes subroutine.

lpf low-pass filter

lsLeft Shift

lv – set contour levels

m2 – convert to power spectrum

mc – magnitude calculation

mem — Maximum entropy; work in progress

mh – set Minimum Height (threshold) for peak picking; can also be set from the View/Processing Parameters menu

ms – multiply sine – apply sine apodization with phase set by S#

no – enter Notes subroutine for text annotation

ns spin simulation subroutine, for calculating spectra from chemical shifts and coupling constants

nucleus – set the nucleus for the chosen dimension. The syntax of the command is, for example, “nucleus 1 1H”, to set the nucleus for the first dimension to proton. This is used for absolute referencing.

p1, p2, p3, p4 – for display of border spectra on 2D plots

pa – set the value of the zero-order phase correction. The command can take one argument, which is the value to which the zero-order correction will be set. If no argument is supplied, the Processing Parameters dialog box is displayed.

pagesetup — allows setting of some parameters related to margins, color, etc.

pairwise (or pw) – display mode for hypercomplex 2D data

pb – set the value of the first-order phase correction. The command can take one argument, which is the value to which the first-order correction will be set. If no argument is supplied, the Processing Parameters dialog box is displayed.

pc – set the value of the second-order phase correction. The command can take one argument, which is the value to which the second-order correction will be set. If no argument is supplied, the Processing Parameters dialog box is displayed.

pe – phasing using expanded regions, useful for fine adjustment of phase correction

penwidth x – to adjust thickness of the line used to draw the spectrum

ph – enter the mouse phasing (PH) subroutine

ph2d – enter the 2D mouse phasing subroutine

phase – used to set and apply phase correction values

pl – plot

plane – used to select a desired plane (2D sub-spectrum) of a 3D data set. “plane ?” will return the current plane number.

play – plays an FID to the computer’s audio speakers (Windows only)

pp – automatic Peak Pick (peak picking works in 1D display mode only)

printdialog on/off – Controls whether or not to display a print dialog box every time PL is executed. To print to a pdf file, this must be set to on.

psphase using saved parameters; allows a set of phase correction parameters from one spectrum to be applied to subsequent spectra

qa – automatic zero-order phase correction

qb – automatic polynomial Quick Baseline correction; see details

qc – apply Quadrature Correction based on parameters determined by QK command

qk – determine quadrature correction parameters, alpha and gamma

qp – quick auto-phase

rdRotate Data, used with digitally filtered data

readini – resets user preferences by reading the wxNUTS.ini configuration file

reference (or ref) – used to reference X-nucleus spectra to the absolute 1H frequency of TMS.

resize – Can be used to reduce the data size by discarding points from the right-hand end (eg, resize n, where n is the number of data points after resizing). Can be used to zero-fill also.

riswap Real and Imaginary halves of the data

rm – RMS noise multiplier, used for peak picking to avoid picking multiple peaks on broad noisy peaks

run – execute a macro

rprimi – (Real plus Real, Imag minus Imag) – combine slices for echo-antiecho data (same as asPairs command); see description of 2D processing

rsRight Shift

run – run a macro

s# – set phase shift for sine multiplication

sa – Save the current data; allowed argument: file name, with or without complete path

SaveChangedData – choose whether the user should be prompted to save changes to the current data file exiting the program

SaveConfig [yes/no] – choose whether the user should be prompted to save changes to preferences on exiting the program.

saveINI – save current settings to wxNUTS.ini configuration file

sb – save file B

scale – allows input of a vertical scaling factor (e.g., “scale 2” will double the vertical scale)

sh [n] – shrink data by dropping points from the right end; if a value n is supplied, that number of points is dropped. See details.

sl – set slice for 2D data

sp – Stacked Plot

sr – Spectrum reverse; reverses the data right-to-left.

sum – Allows all slices of a 2D data set, or a subset of slices, to be summed.

tail – Set zoom limits to display the end of the data. The percentage of data displayed is set with “tail % n” or “tail n” where n is the desired percentage.

td – Transpose data, for magnitude mode data; see description of 2D processing

TDhyper – Transpose data, for hypercomplex data; see description of 2D processing

TDecho – Transpose data, for echo-antiecho data; see description of 2D processing

TPPI2pairwise – Create the additional 2 quadrants of TPPI 2D data, containing zeroes; see description of 2D processing

vw – Stepwise View of slices. Use N and B to display next and previous slice. The number of the currently displayed slice is shown on the gray status bar.

xt – same as Extract; deletes unwanted data on both ends of the spectrum. See details.

zero – Zero all data

zf – Zero-Fill the data to the next higher power of 2

z0 – z9 – Enter limits for one of 10 zoom regions, or set display to previously set zoom limits; applies to dimension 1 only

zo – enter Zoom subroutine

zo2 – set Zoom limits in dimension 2

zo3 – set Zoom limits in dimension 3

zo4 – set Zoom limits in dimension 4

zof – prompt for zoom limits (same as ZO to enter zoom routine, followed by sub-command F)

zp — zero out all phase correction

 


Last updated: 5/5/08